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Selecting file formats

Ensuring that your data is FAIR requires care in selecting file formats. It is important that you consider how your data can be accessed in ten years from now: will software still exist that can read the information?

In the molecular life sciences, it is common to save data in files.  Structured human-readable tabular formats are preferred for files that will be analysed by other researchers. More formal, computer-readable descriptions of the data should complement the files to enable scalable, automated applications.

The UMCs recommend selecting file formats that are:

  • open (i.e., formats that can always be interpreted, so not '.doc' and '.xls' or instrument-specific data formats);
  • well-documented (i.e., rigorous like 'xml' with a schema description is preferred over formats that are open to multiple interpretations like '.csv' without schema descriptions);
  • flexible (i.e., self-describing formats which can adapt to future needs);
  • frequently used (i.e., for which conversion tools will be created and maintained if necessary).

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